Name: Sissades Tongsima

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Education

Selected Publications

1. K. Chaichoompu, S. Kittitornkun, and S. Tongsima. Speedup bioinformatics applications on multicorebased processor using vectorizing and multithreading strategies. Bioinformation, 2(5):182–4, Jan 2007.
2. S. Chasombat, S. Tongsima, N. Pattarapayoon, S. Kohreanudom, and E. Jenwitheesuk. Subtype-specific hiv type 1 genotypic susceptibility interpretation. AIDS Res Hum Retroviruses, 24(12):1565–7, Dec 2008.
3. H. P.-A. S. Consortium, M. A. Abdulla, I. Ahmed, A. Assawamakin, J. Bhak, S. K. Brahmachari, G. C. Calacal, A. Chaurasia, C.-H. Chen, J. Chen, Y.-T. Chen, J. Chu, E. M. C. C. de la Paz, M. C. A. D. Ungria, F. C. Delfin, J. Edo, S. Fuchareon, H. Ghang, T. Gojobori, J. Han, S.-F. Ho, B. P. Hoh, W. Huang, H. Inoko, P. Jha, T. A. Jinam, L. Jin, J. Jung, D. Kangwanpong, J. Kampuansai, G. C. Kennedy, P. Khurana, H.-L. Kim, K. Kim, S. Kim, W.-Y. Kim, K. Kimm, R. Kimura, T. Koike, S. Kulawonganunchai, V. Kumar, P. S. Lai, J.-Y. Lee, S. Lee, E. T. Liu, P. P. Majumder, K. K. Mandapati, S. Marzuki, W. Mitchell, M. Mukerji, K. Naritomi, C. Ngamphiw, N. Niikawa, N. Nishida, B. Oh, S. Oh, J. Ohashi, A. Oka, R. Ong, C. D. Padilla, P. Palittapongarnpim, H. B. Perdigon, M. E. Phipps, E. Png, Y. Sakaki, J. M. Salvador, Y. Sandraling, V. Scaria, M. Seielstad, M. R. Sidek, A. Sinha, M. Srikummool, H. Sudoyo, S. Sugano, H. Suryadi, Y. Suzuki, K. A. Tabbada, A. Tan, K. Tokunaga, S. Tongsima, L. P. Villamor, E. Wang, Y. Wang, H. Wang, J.-Y. Wu, H. Xiao, S. Xu, J. O. Yang, Y. Y. Shugart, H.-S. Yoo, W. Yuan, G. Zhao, B. A. Zilfalil, and I. G. V. Consortium. Mapping human genetic diversity in asia. Science, 326(5959):1541–5, Dec 2009.
4. A. Intarapanich, P. J. Shaw, A. Assawamakin, P. Wangkumhang, C. Ngamphiw, K. Chaichoompu, J. Piriyapongsa, and S. Tongsima. Iterative pruning pca improves resolution of highly structured populations. BMC Bioinformatics, 10:382, Jan 2009.
5. N. Jongkon, W. Mokmak, D. Chuakheaw, P. J. Shaw, S. Tongsima, and C. Sangma. Prediction of avian influenza a binding preference to human receptor using conformational analysis of receptor bound to hemagglutinin. BMC Genomics, 10 Suppl 3:S24, Jan 2009.
6. S. Mahasirimongkol, W. Chantratita, S. Promso, E. Pasomsab, N. Jinawath, W. Jongjaroenprasert, V. Lulitanond, P. Krittayapoositpot, S. Tongsima, P. Sawanpanyalert, N. Kamatani, Y. Nakamura, and T. Sura. Similarity of the allele frequency and linkage disequilibrium pattern of single nucleotide polymorphisms in drug-related gene loci between thai and northern east asian populations: implications for tagging snp selection in thais. J Hum Genet, 51(10):896–904, Jan 2006.
7. W. Makarasara, N. Kumasaka, A. Assawamakin, A. Takahashi, A. Intarapanich, C. Ngamphiw, S. Kulawonganunchai, U. Ruangrit, S. Fucharoen, N. Kamatani, and S. Tongsima. phcr: a parallel haplotype configuration reduction algorithm for haplotype interaction analysis. J Hum Genet, 54(11):634–41, Nov 2009.
8. W. Mokmak, S. Tongsima, and E. Jenwitheesuk. Molecular dynamics simulation of a human thiopurine s-methyltransferase complexed with 6-mercaptopurine model. Bioinformation, 4(2):59–62, Jan 2009.
9. C. Ngamphiw, S. Kulawonganunchai, A. Assawamakin, E. Jenwitheesuk, and S. Tongsima. Vardetect: a nucleotide sequence variation exploratory tool. BMC Bioinformatics, 9 Suppl 12:S9, Jan 2008.
10. J. Piriyapongsa, C. Ngamphiw, A. Assawamakin, P. Wangkumhang, P. Suwannasri, U. Ruangrit, G. Agavatpanitch, and S. Tongsima. Rexprimer: an integrated primer designing tool increases pcr effectiveness by avoiding 3’ snp-in-primer and mis-priming from structural variation. BMC Genomics, 10 Suppl 3:S4, Jan 2009.
11. U. Ruangrit, M. Srikummool, A. Assawamakin, C. Ngamphiw, S. Chuechote, V. Thaiprasarnsup, G. Agavatpanitch, E. Pasomsab, P. Yenchitsomanus, S. Mahasirimongkol, W. Chantratita, P. Palittapongarnpim, B. Uyyanonvara, C. Limwongse, and S. Tongsima. Thailand mutation and variation database (thaimut). Hum Mutat, May 2008.
12. U. Sangket, A. Phongdara, W. Chotigeat, D. Nathan, W.-Y. Kim, J. Bhak, C. Ngamphiw, S. Tongsima, A. M. Khan, H. Lin, and T. W. Tan. Automatic synchronization and distribution of biological databases and software over low-bandwidth networks among developing countries. Bioinformatics, 24(2):299–301, Jan 2008.
13. C. Tocharoentanaphol, S. Promso, D. Zelenika, T. Lowhnoo, S. Tongsima, T. Sura, W. Chantratita, F. Matsuda, S. Mooney, and A. Sakuntabhai. Evaluation of resequencing on number of tag snps of 13 atherosclerosis-related genes in thai population. J Hum Genet, 53(1):74–86, Jan 2008.
14. W. Tongsima, S. Tongsima, and P. Palittapongarnpim. Outlook on thailand’s genomics and computational biology research and development. PLoS Comput Biol, 4(7):e1000115, Jul 2008.
15. P. Wangkumhang, K. Chaichoompu, C. Ngamphiw, U. Ruangrit, J. Chanprasert, A. Assawamakin, and S. Tongsima. Wasp: a web-based allele-specific pcr assay designing tool for detecting snps and mutations. BMC Genomics, 8:275, Jan 2007.
16. A. Wilantho, S. Tongsima, and E. Jenwitheesuk. Pre-docking filter for protein and ligand 3d structures. Bioinformation, 3(5):189–93, Jan 2008.

17. S. Xu, D. Kangwanpong, M. Seielstad, M. Srikummool, J. Kampuansai, L. Jin, and H. P.-A. S. Consortium. Genetic evidence supports linguistic affinity of mlabri–a hunter-gatherer group in thailand. BMC Genet, 11:18, Jan 2010.