Genetic data and analysis tools

Black Tiger Shrimp (Penaeus monodon) genome

• Raw Iso-Seq data of 10 tissues
  • ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/087/SRR10972787/SRR10972787_subreads.fastq.gz
  • ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/086/SRR10972786/SRR10972786_subreads.fastq.gz
  • ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/084/SRR10972784/SRR10972784_subreads.fastq.gz
  • ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/085/SRR10972785/SRR10972785_subreads.fastq.gz
  • ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/083/SRR10972783/SRR10972783_subreads.fastq.gz
  • ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/082/SRR10972782/SRR10972782_subreads.fastq.gz
  • ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/081/SRR10972781/SRR10972781_subreads.fastq.gz
  • ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/080/SRR10972780/SRR10972780_subreads.fastq.gz
  • ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/079/SRR10972779/SRR10972779_subreads.fastq.gz
  • ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/078/SRR10972778/SRR10972778_subreads.fastq.gz
    
    
    
• Non-redundant transcripts
  
  • ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/029/SRR10954129/SRR10954129_subreads.fastq.gz
    
    

• Raw genomic sequences (Accession: PRJNA611030)
  Raw PacBio reads
  using Genomic-tip for DNA extraction are at accession numbers: SRR12622216 - SRR12622246 and SRR12622249 - SRR12622254

  using Mollusc genomic DNA kit: SRR12622247 - SRR12622248

• Genomic sequences used for generating the P. monodon genome assembly including PacBio sequences, Dovetail Chicago data, and Dovetail Hi-C data can be accessed through the link.
  
  

• Black tiger shrimp genome version0 (Genome scaffold sequences, GFF, genes and protein sequences)
  
  
• Genome data viewer

   

   
  
  

• Basic local alignment (BLAST)